Newsletter - April 2025

3 blog posts, 10 pipeline releases, 6 upcoming events.

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1st April 2025

Blog posts

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/genomeassembler v1.0.0 v1.0.1 Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Pipeline releases

Upcoming events

Talk Bytesize: nf-core/variantbenchmarking	1 Apr 2025
Kübra Narci, German Human Genome-Penome Archieve, DKFZ Heidelberg

Talk Bytesize: nf-core/proteinfamilies	8 Apr 2025
Evangelos Karatzas, EMBL-EBI, Cambridge

Talk #animal-genomics: April Meeting	16 Apr 2025
Damir Baranasic (MRC, London Institute of Medical Sciences, UK)

Talk Bytesize: nf-core/fastqrepair	13 May 2025
Tommaso Mazza, IRCCS Casa Sollievo della Sofferenza - Mendel

Hackathon Hackathon - May 2025 (Boston)	13 May 2025 – 14 May 2025
An in-person hackathon held in Boston

Talk #animal-genomics: May Meeting	21 May 2025
James Reecy (Iowa State University, USA)

In case you missed it

New pipelines & proposals

New pipeline repositories

nf-core/proteinannotator Generation of sequence-level annotations for amino acid sequences

nf-core/rarevariantburden In Development Pipeline for performing consistent summary count based rare variant burden test, which is useful when we only have sequenced cases data. For example, we can compare the cases against public summary count data, such as gnomAD.

nf-core/variantprioritization In Development Analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number aberations for precision cancer medicine.

Pipeline proposals

From nf-core/proposals

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