1 blog post, 11 pipeline releases, 7 upcoming events.

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nf-core newsletter

1st January 2025

Blog posts

nf-core/tools - 3.1.0
Everything is going crate
10 Dec 2024 · by mashehu, mirpedrol, ewels

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/phaseimpute v1.0.0
A bioinformatics pipeline to phase and impute genetic data
nf-core/references v0.1
nf-core/references is a bioinformatics pipeline that build references, for multiple use cases

Pipeline releases

nf-core/airrflow
v4.2.0 11 Dec 2024
nf-core/demultiplex
v1.5.4 10 Dec 2024
nf-core/fastquorum
v1.1.0 2 Dec 2024
nf-core/mag
v3.3.0 19 Dec 2024
nf-core/methylseq
v3.0.0 16 Dec 2024
nf-core/pairgenomealign
v1.1.1 18 Dec 2024
nf-core/rnaseq
v3.18.0 20 Dec 2024
nf-core/sarek
v3.5.0 12 Dec 2024
nf-core/scrnaseq
v3.0.0 10 Dec 2024

Upcoming events

Talk Bytesize: Content Addressable Data Storage 14 Jan 2025
Rob Syme, Seqera
Talk #regulatory - monthly meeting 21 Jan 2025
Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Talk #animal-genomics: January Meeting 22 Jan 2025
ELIXIR Domestic Animals Genome & Phenome Focus Group white paper section round table
Talk Bytesize: using JSON schema in Nextflow pipelines 28 Jan 2025
Nicolas Vannieuwkerke, Center for Medical Genetics Ghent
Talk Bytesize: nf-core/smrnaseq 11 Feb 2025
Alex Peltzer, Boehringer Ingelheim
Talk #animal-genomics: February Meeting 19 Feb 2025
Harris Lewin (Arizona State University, USA)
Talk Bytesize: data science operations (DSO) 25 Feb 2025
Gregor Sturm, Boehringer Ingelheim

In case you missed it

New pipelines & proposals

New pipeline repositories

nf-core/abotyper In Development
A pipeline for characterising the Human Blood Group and Red Cell Antigens using Oxford Nanopore third-generation sequencing data.
nf-core/stableexpression In Development
This pipeline is dedicated to identifying the most stable genes within a single or multiple expression dataset(s). This is particularly useful for identifying the most suitable RT-qPCR reference genes for a specific species.

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