Newsletter - September 2023
nf-core community newsletter for September 2023
5 pipeline releases, 12 upcoming events.
 1st September 2023 |
New pipeline first releases! 🎉
These pipelines just had their very first release.
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nf-core/pangenome
v1.0.0 Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609. |
Pipeline releases
Upcoming events
| Talk Bytesize: Setting up a gitpod environment | 5 Sept 2023 |
| Marcel Ribeiro-Dantas, Seqera Labs | |
| Training Community Foundational Nextflow Training - September 2023 | 6 Sept 2023 – 8 Sept 2023 |
| The primary Nextflow / nf-core training for beginners, with 3 x 2.5 hour sessions. | |
| Talk Bytesize: A beginners guide to nf-core | 12 Sept 2023 |
| Franziska Bonath, National Genomics Infrastructure, Stockholm | |
| Talk Bytesize: Using Wave Containers | 19 Sept 2023 |
| Marcel Ribeiro-Dantas, Seqera Labs | |
| Training Hands-on Nextflow Training - September 2023 | 20 Sept 2023 |
| A fast way to get up and running with Nextflow - hands on and light on theory. One 2 hour session. | |
| Training Community Advanced Nextflow Training - September 2023 | 27 Sept 2023 – 28 Sept 2023 |
| Join us for the first ever Advanced community training! Become a Nextflow expert! | |
| Talk Bytesize: The new nf-core website | 3 Oct 2023 |
| Matthias Hörtenhuber, Scilifelab Data Center | |
| Talk Bytesize: Using nf-core configs in custom pipelines | 10 Oct 2023 |
| Judith Ballesteros, Max Planck Institute for evolutionary anthropology | |
| Talk Nextflow in Action | 12 Oct 2023 |
| Tree of Life, Wellcome Sanger Institute and Genomics England | |
| Hackathon Hackathon - October 2023 (Barcelona) | 16 Oct 2023 – 18 Oct 2023 |
| A hybrid hackathon held in Barcelona and online | |
| Talk Bytesize: nf-core/viralintegration | 24 Oct 2023 |
| Alyssa Briggs, The University of Texas at Dallas | |
| Talk Bytesize: Converting pytest modules to nf-test | 31 Oct 2023 |
| Adam Talbot (Seqera) and Sateesh Peri (MemVerge) | |
New pipelines & proposals
New pipeline repositories
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nf-core/diseasemodulediscovery
In Development
A pipeline for network-based disease module identification. |
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nf-core/drugresponseeval Pipeline for testing drug response prediction models in a statistically and biologically sound way. |
| This newsletter is brought to you by the nf-core community. |