15 pipeline releases, 7 upcoming events.

View in browser

nf-core newsletter

1st April 2023

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/taxprofiler v1.0.0
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
nf-core/viralintegration v0.1.0
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.

Pipeline releases

nf-core/airrflow
v3.0 20 Mar 2023
nf-core/ampliseq
v2.5.0 2 Mar 2023
nf-core/circdna
v1.0.2 9 Mar 2023
nf-core/cutandrun
v3.1 10 Mar 2023
nf-core/epitopeprediction
v2.2.0 v2.2.1 17 Mar 2023
nf-core/isoseq
v1.1.3 v1.1.4 13 Mar 2023
nf-core/mag
v2.3.0 2 Mar 2023
nf-core/nanoseq
v3.1.0 10 Mar 2023
nf-core/rnafusion
v2.2.0 13 Mar 2023
nf-core/rnaseq
v3.11.0 v3.11.1 31 Mar 2023
nf-core/scrnaseq
v2.2.0 20 Mar 2023
nf-core/viralrecon
v2.6.0 23 Mar 2023

Upcoming events

Talk Bytesize: HackMD and reveal.js 18 Apr 2023
Maxime Garcia, Seqera Labs
Talk Bytesize: training translations 25 Apr 2023
Marcel Ribeiro-Dantas, Seqera Labs
Talk Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers 2 May 2023
Phil Ewels - Seqera Labs
Talk Bytesize: Experiences in the nf-core Mentoring Program 9 May 2023
Mariana Guilardi (Federal University of Sao Paulo, UNIFESP) and Alyssa Briggs (The University of Texas at Dallas)
Talk Bytesize: nf-core community survey 2023 16 May 2023
Christopher Hakkaart - Seqera Labs
Talk Bytesize: Workflow safety and immutable objects 23 May 2023
Rob Syme, Seqera Labs
Talk Bytesize: nf-core/quantms 30 May 2023
Julianus Pfeuffer (Zuse Institute Berlin) and Yasset Perez Riverol (EMBL-EBI)

In case you missed it

nf-core Training - March 2023
13 Mar 2023 – 16 Mar 2023 Training
Hackathon - March 2023 (Online)
27 Mar 2023 – 29 Mar 2023 Hackathon

New pipelines & proposals

New pipeline repositories

nf-core/spinningjenny In Development
Pipeline for simulating the first industrial revolution using Agent Based Models.

This newsletter is brought to you by the nf-core community.

Join us · Blog · Events · GitHub