Newsletter - February 2023
nf-core community newsletter for February 2023
1 advisory, 6 pipeline releases, 8 upcoming events.
 1st February 2023 |
Advisories
| low Known Regression Trimming parameters ignored in RNA-seq pipeline 3.10 The clip parameters for read trimming remain without affect for that pipeline version |
New pipeline first releases! 🎉
These pipelines just had their very first release.
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nf-core/differentialabundance
v1.0.0
v1.0.1 Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq |
Pipeline releases
Upcoming events
| Talk Bytesize: nf-core/pre-commit | 7 Feb 2023 |
| Matthias Hörtenhuber, Scilifelab Data Centre, Sweden | |
| Talk Bytesize: nf-core/crisprseq | 14 Feb 2023 |
| Júlia Mir (QBiC, Tübingen University) and Marta Sanvincente (Pompeu Fabra University, Barcelona) | |
| Talk Bytesize: variantcatalogue | 21 Feb 2023 |
| Solenne Correard, University of British Columbia, Vancouver, Canada | |
| Talk Bytesize: nf-core/mag | 28 Feb 2023 |
| Sabrina Krakau - University Tübingen, QBiC | |
| Talk Bytesize: nf-core modules patch | 7 Mar 2023 |
| Phil Ewels - Seqera Labs | |
| Training nf-core Training - March 2023 | 13 Mar 2023 – 16 Mar 2023 |
| A set of global online Nextflow and nf-core training events | |
| Talk Bytesize: nf-core/hgtseq | 21 Mar 2023 |
| Francesco Lescai - Department of Biology and Biotechnology, University of Pavia | |
| Hackathon Hackathon - March 2023 (Online) | 27 Mar 2023 – 29 Mar 2023 |
| A virtual hackathon with local gatherings to develop nf-core together | |
In case you missed it
New pipelines & proposals
New pipeline repositories
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nf-core/pathogensurveillance Surveillance of pathogens using population genomics and sequencing |
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nf-core/viralmetagenome A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples. |
| This newsletter is brought to you by the nf-core community. |