9 pipeline releases, 4 upcoming events.
 1st July 2022 |
New pipeline first releases! 🎉
These pipelines just had their very first release.
|
nf-core/circdna
v1.0.0
v1.0.1 Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells. |
|
nf-core/isoseq
v1.0.0 Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation. |
|
nf-core/rnavar
v1.0.0 gatk4 RNA variant calling pipeline |
Pipeline releases
Upcoming events
| Talk Bytesize: DSL2 Coding style recommendations (Part 1) | 5 Jul 2022 |
| Maxime Garcia - Barncancerfonden, Stockholm, Sweden | |
| Talk Bytesize: nf-core/inkscape and tube map diagrams | 12 Jul 2022 |
| James Fellows Yates - Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | |
| Talk Bytesize: Bactopia & using nf-core components in non-nf-core pipelines | 19 Jul 2022 |
| Robert A Petit III - Wyoming Public Health Lab, USA | |
| Talk Bytesize: nf-core/chipseq | 26 Jul 2022 |
| Jose Espinosa-Carrasco - Center for Genomic Regulation, Barcelona | |
In case you missed it
New pipelines & proposals
New pipeline repositories
|
nf-core/isoseq Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation. |
|
nf-core/rnadnavar
In Development
Pipeline for RNA and DNA integrated analysis for somatic mutation detection |
| This newsletter is brought to you by the nf-core community. |