Construct a dynamic succinct variation graph in ODGI format from a GFAv1.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
graph
:file
Pangenome graph in GFA v1.0 format
*.{gfa}
og
*.og
File containing a pangenome graph in ODGI binary format. Usually ends with ‘.og’
*.{og}
versions_odgi
${task.process}
:string
The name of the process
odgi
The name of the tool
odgi version | sed 's/^v//; s/-.*//'
:eval
The expression to obtain the version of the tool
versions
An optimized dynamic genome/graph implementation
